diff --git a/src/nf_modules/emase-zero/main.nf b/src/nf_modules/emase-zero/main.nf index 93f805189c3b1189853e39f6566157c68cb6fc15..5f4f53351c2ff0f40aeb5075fdebb27a788d58b4 100644 --- a/src/nf_modules/emase-zero/main.nf +++ b/src/nf_modules/emase-zero/main.nf @@ -50,9 +50,9 @@ emase-zero ${params.count} \ -o ${bin.simpleName}.quantified \ -l ${transcript_length} \ -g gene_to_transcript.txt \ - ${bin} 2> ${file_prefix}_emase-zero_repport.txt + ${bin} 2> ${file_id}_emase-zero_repport.txt -if grep -q "ERROR" ${file_prefix}_emase-zero_repport.txt; then +if grep -q "ERROR" ${file_id}_emase-zero_repport.txt; then exit 1 fi