diff --git a/src/singularity_modules/picard/2.18.11/PicardCommandLine b/src/singularity_modules/picard/2.18.11/PicardCommandLine new file mode 100644 index 0000000000000000000000000000000000000000..ce067365785f2f03c722668eff8d80a94b9b34d3 --- /dev/null +++ b/src/singularity_modules/picard/2.18.11/PicardCommandLine @@ -0,0 +1,15 @@ +#!/bin/sh +set -eu +PRG="$(basename -- "$0")" +case "$PRG" in +picard-tools) + echo 1>&2 'Warning: picard-tools is deprecated and should be replaced by PicardCommandLine' + ;; +PicardCommandLine) + ;; +*) + set -- "$PRG" "$@" + ;; +esac + +exec java ${JAVA_OPTIONS-} -jar /usr/share/java/picard.jar "$@"