diff --git a/src/nf_modules/bedtools/fasta_from_bed.config b/src/nf_modules/bedtools/fasta_from_bed.config index d0502f572f9af375dbb0de6c146b68a69d14aee0..eed7325870c38ba8453ea1090c02c8c879c5752f 100644 --- a/src/nf_modules/bedtools/fasta_from_bed.config +++ b/src/nf_modules/bedtools/fasta_from_bed.config @@ -32,4 +32,19 @@ profiles { } } } + ccin2p3 { + process{ + withName: fasta_from_bed { + beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/bedtools/2.25.0/:/usr/bin:$PATH" + scratch = true + stageInMode = "copy" + stageOutMode = "rsync" + executor = "sge" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" + cpus = 1 + memory = "10GB" + time = "24h" + } + } + } }