diff --git a/src/nf_modules/minimap2/main.nf b/src/nf_modules/minimap2/main.nf
index d404ac79ec917583d2ea0d77621eae728db3e39f..5ac898204bd348dde6582630908d0e528721d1f5 100644
--- a/src/nf_modules/minimap2/main.nf
+++ b/src/nf_modules/minimap2/main.nf
@@ -56,7 +56,7 @@ process mapping_fastq {
   minimap2 ${params.mapping_fastq} -t ${task.cpus} -K ${memory} ${fasta} ${reads[0]} ${reads[1]} |
     samtools view -Sb - > ${pair_id}.bam
   """
-  else if (reads.size() == 1)
+  else
   """
   minimap2 ${params.mapping_fastq} -t ${task.cpus} -K ${memory} ${fasta} ${reads} |
     samtools view -Sb - > ${pair_id}.bam