From a2ddd33f5111e91eabd42038dbf209cc0c4edf85 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 30 May 2018 18:03:06 +0200
Subject: [PATCH] Salmon/0.8.2: add docker files
---
src/nf_modules/Salmon/0.8.2/Dockerfile | 15 +++++++++++++++
src/nf_modules/Salmon/0.8.2/docker_init.sh | 2 ++
2 files changed, 17 insertions(+)
create mode 100644 src/nf_modules/Salmon/0.8.2/Dockerfile
create mode 100755 src/nf_modules/Salmon/0.8.2/docker_init.sh
diff --git a/src/nf_modules/Salmon/0.8.2/Dockerfile b/src/nf_modules/Salmon/0.8.2/Dockerfile
new file mode 100644
index 00000000..31bb28ec
--- /dev/null
+++ b/src/nf_modules/Salmon/0.8.2/Dockerfile
@@ -0,0 +1,15 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV SALMON_VERSION=0.8.2
+ENV PACKAGES curl=7.58.0* \
+ ca-certificates=20180409
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
+
+RUN curl -k -L https://github.com/COMBINE-lab/salmon/releases/download/v${SALMON_VERSION}/Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz -o Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \
+tar xzf Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz && \
+mv Salmon-${SALMON_VERSION}_linux_x86_64/bin/* /usr/bin/ && \
+rm -Rf Salmon-${SALMON_VERSION}*
diff --git a/src/nf_modules/Salmon/0.8.2/docker_init.sh b/src/nf_modules/Salmon/0.8.2/docker_init.sh
new file mode 100755
index 00000000..ecfa970f
--- /dev/null
+++ b/src/nf_modules/Salmon/0.8.2/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/nf_modules/Salmon/0.8.2 -t 'salmon:0.8.2'
--
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