diff --git a/src/.docker_modules/gffread/0.12.2/Dockerfile b/src/.docker_modules/gffread/0.12.2/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..a60a75facd1d5a641231b946181a12ca9a6172c8 --- /dev/null +++ b/src/.docker_modules/gffread/0.12.2/Dockerfile @@ -0,0 +1,16 @@ +FROM alpine:3.12 +MAINTAINER Laurent Modolo + +ENV GFFREAD_VERSION=0.12.2 +ENV PACKAGES make \ + g++ \ + bash \ + perl + +RUN apk update && \ + apk add ${PACKAGES} && \ +wget http://ccb.jhu.edu/software/stringtie/dl/gffread-${GFFREAD_VERSION}.tar.gz && \ +tar -xvf gffread-${GFFREAD_VERSION}.tar.gz && \ +cd gffread-${GFFREAD_VERSION}/ && \ +make && \ +cp gffread /usr/bin/ diff --git a/src/.docker_modules/gffread/0.12.2/docker_init.sh b/src/.docker_modules/gffread/0.12.2/docker_init.sh new file mode 100755 index 0000000000000000000000000000000000000000..72debe46652d5e66be7cee9067d33083f28e04ee --- /dev/null +++ b/src/.docker_modules/gffread/0.12.2/docker_init.sh @@ -0,0 +1,4 @@ +#!/bin/sh +docker pull lbmc/gffread:0.12.2 +docker build src/.docker_modules/gffread/0.12.2 -t 'lbmc/gffread:0.12.2' +docker push lbmc/gffread:0.12.2