From 9db0f36e3dc23f9180dc860237b3a73ec1f57f71 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Thu, 22 Apr 2021 10:19:17 +0200 Subject: [PATCH] nf_projects.md: update list --- doc/nf_projects.md | 15 ++++++++++++++- 1 file changed, 14 insertions(+), 1 deletion(-) diff --git a/doc/nf_projects.md b/doc/nf_projects.md index 2307ef1c..9ecab839 100644 --- a/doc/nf_projects.md +++ b/doc/nf_projects.md @@ -1,5 +1,15 @@ ## Projects using nextflow +This page list existing Nextflow based pipeline projects into different categories + +- [RNASeq](./nf_projects.md#rnaseq) +- [scRNASeq](./nf_projects.m#scrnaseq) +- [DNASeq](./nf_projects.md#dnaseq) +- [ChipSeq](./nf_projects.md#chipseq) + +To add your project to this list, please fork this project, modify this file and make a merge request. + + ### RNASeq - [https://_https://gitlab.biologie.ens-lyon.fr/gylab/salmoninyeast](https://_https://gitlab.biologie.ens-lyon.fr/gylab/salmoninyeast) @@ -7,15 +17,18 @@ - [https://_https://gitlab.biologie.ens-lyon.fr/vvanoost/nextflow](https://_https://gitlab.biologie.ens-lyon.fr/vvanoost/nextflow) - [https://gitlab.biologie.ens-lyon.fr/elabaron/HIV_project](https://gitlab.biologie.ens-lyon.fr/elabaron/HIV_project) -### single-cell RNA_-Seq +### scRNASeq - [https://gitlab.com/LBMC_UMR5239/sbdm/mars-seq](https://gitlab.com/LBMC_UMR5239/sbdm/mars-seq) ### DNASeq - [https://github.com/LBMC/ChrSexebelari](https://github.com/LBMC/ChrSexebelari) +- [https://gitbio.ens-lyon.fr/LBMC/gylab/MappingNoise](https://gitbio.ens-lyon.fr/LBMC/gylab/MappingNoise) +- [https://gitbio.ens-lyon.fr/LBMC/qrg/droso_hic_group/droso_haplo_rna_seq](https://gitbio.ens-lyon.fr/LBMC/qrg/droso_hic_group/droso_haplo_rna_seq) ### Chip-Seq - [https://gitlab.biologie.ens-lyon.fr/Auboeuf/ChIP-seq](https://gitlab.biologie.ens-lyon.fr/Auboeuf/ChIP-seq) +- [https://gitbio.ens-lyon.fr/LBMC/Bernard/quantitative-nucleosome-analysis](https://gitbio.ens-lyon.fr/LBMC/Bernard/quantitative-nucleosome-analysis) -- GitLab