diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index fda8610296919a5b812063276e530606466b4403..ece0991bdfdb9fbb5d5513b78d5484363e053b59 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -2,8 +2,7 @@ version = "v2.2.2_cv3" container_url = "biocontainers/danpos:${version}" include { - bigwig_to_wig as bigwig_to_wig_ip; - bigwig_to_wig_ip as bigwig_to_wig_wce + bigwig_to_wig } from "./../ucsc/main.nf" params.dpos = "--smooth_width 0 -n N " @@ -59,9 +58,7 @@ workflow dpos_bg { bg_ip bg_wce main: - bigwig_to_wig_ip(bg_ip) - bigwig_to_wig_wce(bg_wce) - dpos_wig(fastq, bigwig_to_wig_ip.out.wig, bigwig_to_wig_wce.out.wig) + dpos_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce)) emit: wig = dpos_wig.out.wig folder = dpos_wig.out.folder @@ -210,9 +207,7 @@ workflow dpeak_bg { bg_ip bg_wce main: - bigwig_to_wig_ip(bg_ip) - bigwig_to_wig_wce(bg_wce) - dpeak_wig(fastq, bigwig_to_wig_ip.out.wig, bigwig_to_wig_wce.out.wig) + dpeak_wig(fastq, bigwig_to_wig(bg_ip), bigwig_to_wig(bg_wce)) emit: wig = dpeak_wig.out.wig folder = dpeak_wig.out.folder @@ -270,14 +265,12 @@ workflow dpeak_bgvsbg { bg_ip_b bg_wce_b main: - bigwig_to_wig_ip(bg_ip) - bigwig_to_wig_wce(bg_wce) dpeak_wigvswig( fastq, - bigwig_to_wig_ip(bg_ip_a).out.wig, - bigwig_to_wig_wce(bg_wce_a).out.wig, - bigwig_to_wig_ip(bg_ip_b).out.wig, - bigwig_to_wig_wce(bg_wce_b).out.wig + bigwig_to_wig(bg_ip_a), + bigwig_to_wig(bg_wce_a), + bigwig_to_wig(bg_ip_b), + bigwig_to_wig(bg_wce_b) ) emit: wig = dpeak_wig.out.wig