From 9bb0eb3874afdaddef73f12eecad90ce1e9e56c7 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 29 Apr 2021 17:31:52 +0200
Subject: [PATCH] flexi_splitter: fix paired-end input :33
---
src/nf_modules/flexi_splitter/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/flexi_splitter/main.nf b/src/nf_modules/flexi_splitter/main.nf
index d7a87b94..42d405af 100644
--- a/src/nf_modules/flexi_splitter/main.nf
+++ b/src/nf_modules/flexi_splitter/main.nf
@@ -30,7 +30,7 @@ process split {
if (reads.size() == 2)
"""
- flexi_splitter ${params.split} -n 2 -f ${reads[0]} ${reads[1]} -o split -c ${config}
+ flexi_splitter ${params.split} -n 2 -f ${reads[0]},${reads[1]} -o split -c ${config}
"""
else
"""
--
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