From 9b592f1d6e40a2845225ab1c32ae418e4a16c662 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 3 Feb 2023 13:51:19 +0100
Subject: [PATCH] src/nextflow.config: update psmn profile
---
src/nextflow.config | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/src/nextflow.config b/src/nextflow.config
index cb62ae51..20c5d307 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -85,8 +85,9 @@ profiles {
}
psmn {
charliecloud.enabled = true
- charliecloud.cacheDir = "/Xnfs/abc/charliecloud"
- charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs"
+ cacheDir = "/Xnfs/abc/charliecloud"
+ runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home"
+ readOnlyInputs = true
process{
errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
maxRetries = 3
--
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