diff --git a/src/nextflow.config b/src/nextflow.config index cb62ae51e083b7b6f7de5693f788902c3ef1767f..20c5d30739f87e341bdba8b07eab53fb2279ae88 100644 --- a/src/nextflow.config +++ b/src/nextflow.config @@ -85,8 +85,9 @@ profiles { } psmn { charliecloud.enabled = true - charliecloud.cacheDir = "/Xnfs/abc/charliecloud" - charliecloud.runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs" + cacheDir = "/Xnfs/abc/charliecloud" + runOptions = "--bind /scratch:/scratch --bind /Xnfs:/Xnfs --bind /home:/home" + readOnlyInputs = true process{ errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' } maxRetries = 3