From 976e5e03150343b233a978145d811abe06877248 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 4 Mar 2019 17:34:26 +0100
Subject: [PATCH] sratoolkit: add singularity files
---
.../sratoolkit/2.8.2/build.sh | 3 +++
.../sratoolkit/2.8.2/sratoolkit.def | 19 +++++++++++++++++++
2 files changed, 22 insertions(+)
create mode 100755 src/singularity_modules/sratoolkit/2.8.2/build.sh
create mode 100644 src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def
diff --git a/src/singularity_modules/sratoolkit/2.8.2/build.sh b/src/singularity_modules/sratoolkit/2.8.2/build.sh
new file mode 100755
index 00000000..7464d50e
--- /dev/null
+++ b/src/singularity_modules/sratoolkit/2.8.2/build.sh
@@ -0,0 +1,3 @@
+#/bin/sh
+sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def
+singularity sign bin/sratoolkit:2.8.2.sif
diff --git a/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def b/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def
new file mode 100644
index 00000000..7fd70f27
--- /dev/null
+++ b/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def
@@ -0,0 +1,19 @@
+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+SRATOOLKIT_VERSION=2.8.2
+PACKAGES=sra-toolkit=${SRATOOLKIT_VERSION}*
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+%environment
+export SRATOOLKIT_VERSION=2.8.2
+
+%runscript
+exec /bin/bash "$@"
--
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