diff --git a/src/singularity_modules/sratoolkit/2.8.2/build.sh b/src/singularity_modules/sratoolkit/2.8.2/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..7464d50e223bbb2aa889ba5bce5bad2f6edaf0ed --- /dev/null +++ b/src/singularity_modules/sratoolkit/2.8.2/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def +singularity sign bin/sratoolkit:2.8.2.sif diff --git a/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def b/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def new file mode 100644 index 0000000000000000000000000000000000000000..7fd70f27bbb10d8e78268431b143d422f9b6dc40 --- /dev/null +++ b/src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def @@ -0,0 +1,19 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%labels +MAINTAINER Laurent Modolo + +%post +SRATOOLKIT_VERSION=2.8.2 +PACKAGES=sra-toolkit=${SRATOOLKIT_VERSION}* + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +%environment +export SRATOOLKIT_VERSION=2.8.2 + +%runscript +exec /bin/bash "$@"