From 92896b97747af9810a03a532cd87b92c7b79d5ae Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 29 Sep 2021 10:07:16 +0200
Subject: [PATCH] src/nextflow.config: add podman profile
---
src/nextflow.config | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/src/nextflow.config b/src/nextflow.config
index 05a44103..859be7ad 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -35,6 +35,27 @@ profiles {
}
}
}
+ podman {
+ podman.enabled = true
+ process {
+ errorStrategy = 'finish'
+ memory = '16GB'
+ withLabel: big_mem_mono_cpus {
+ cpus = 1
+ }
+ withLabel: big_mem_multi_cpus {
+ cpus = 4
+ }
+ withLabel: small_mem_mono_cpus {
+ cpus = 1
+ memory = '2GB'
+ }
+ withLabel: small_mem_multi_cpus {
+ cpus = 4
+ memory = '2GB'
+ }
+ }
+ }
singularity {
singularity.enabled = true
singularity.cacheDir = "./bin/"
--
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