From 91ec481f4af20a85cdd0500c896ac87a6af6960f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 16 Apr 2021 17:20:42 +0200
Subject: [PATCH] kallisto: fix output capture
---
src/nf_modules/kallisto/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/kallisto/main.nf b/src/nf_modules/kallisto/main.nf
index 67570e2d..b4d59dca 100644
--- a/src/nf_modules/kallisto/main.nf
+++ b/src/nf_modules/kallisto/main.nf
@@ -40,7 +40,7 @@ process mapping_fastq {
tuple val(file_id), path(reads)
output:
- tuple val(file_id), path("${pair_id}"), emit: counts
+ tuple val(file_id), path("${file_prefix}"), emit: counts
tuple val(file_id), path("*_report.txt"), emit: report
script:
--
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