diff --git a/src/singularity_modules/picard/2.18.11/build.sh b/src/singularity_modules/picard/2.18.11/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..aa29178c23b2201588efe73177c9f45b90e612e4 --- /dev/null +++ b/src/singularity_modules/picard/2.18.11/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/picard:2.18.11.sif src/singularity_modules/picard/2.18.11/picard.def +singularity sign bin/picard:2.18.11.sif diff --git a/src/singularity_modules/picard/2.18.11/picard.def b/src/singularity_modules/picard/2.18.11/picard.def new file mode 100644 index 0000000000000000000000000000000000000000..27a3e18aa7151ca50598ee7248b0ece63a25b6e7 --- /dev/null +++ b/src/singularity_modules/picard/2.18.11/picard.def @@ -0,0 +1,30 @@ +Bootstrap: docker +From: ubuntu:18.04 + +%files +src/singularity_modules/picard/2.18.11/PicardCommandLine /usr/bin/ + +%labels +MAINTAINER Laurent Modolo + +%post +PICARD_VERSION=2.18.11 +PACKAGES="default-jre \ +curl \ +ca-certificates" + + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +curl -k -L https://github.com/broadinstitute/picard/releases/download/${PICARD_VERSION}/picard.jar -o picard.jar && \ +mkdir -p /usr/share/java/ && \ +mv picard.jar /usr/share/java/ +chmod +x /usr/bin/PicardCommandLine + +%environment +export PICARD_VERSION=2.18.11 + +%runscript +exec /bin/bash "$@"