diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 5db9785cafc9c750848c1db14d15b9f9eb351ac5..b39d4a0b99ba4f99e82e50995ba10946bc2f32d4 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -51,6 +51,7 @@ profiles {
   }
   ccin2p3_singularity {
     singularity.enabled = true
+    singularity.autoMounts = true
     process{
       withName: index_fasta {
         container = "/sps/lbmc/common/singularity/kallisto:0.44.0.img"