From 84b2ae0e84b10d2659c1080bce67014f803721fe Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 4 Jun 2021 10:12:58 +0200
Subject: [PATCH] multiqc: add workflow to perform report channel cleanning
---
src/nf_modules/multiqc/main.nf | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/src/nf_modules/multiqc/main.nf b/src/nf_modules/multiqc/main.nf
index 0b24b68a..f7ac1dd6 100644
--- a/src/nf_modules/multiqc/main.nf
+++ b/src/nf_modules/multiqc/main.nf
@@ -3,6 +3,25 @@ container_url = "lbmc/multiqc:${version}"
params.multiqc = ""
params.multiqc_out = "QC/"
+workflow multiqc {
+ take:
+ report
+ main:
+ report.map{
+ if (it instanceof List){
+ it[1]
+ } else {
+ it
+ }
+ }
+ .unique()
+ .set { report_cleaned }
+ multiqc_default(report_cleaned.collect())
+
+ emit:
+ report = multiqc_default.out.report
+}
+
process multiqc {
container = "${container_url}"
label "big_mem_mono_cpus"
--
GitLab