diff --git a/src/conda_packages.sh b/src/conda_packages.sh
index 5c39b0cba8f9b30772ad6ae685194c26f32d3116..f4be84f8f6af4ea28197a7abac2f22ff7a774e11 100644
--- a/src/conda_packages.sh
+++ b/src/conda_packages.sh
@@ -57,4 +57,5 @@ install_env file handle 0.1.1 file handle
 install_env ncdu 1.13 ncdu
 install_env picard 2.18.11 picard
 install_env sambamba 0.6.7 sambamba
+install_env subread 1.6.4 subread
 
diff --git a/src/nextflow.pbs b/src/nextflow.pbs
index d1fede85c35396fd869d18b90003aad77a4491f1..4cb6e04c8dcc4c2f70855471e719b535438bc4a2 100644
--- a/src/nextflow.pbs
+++ b/src/nextflow.pbs
@@ -17,9 +17,13 @@
 
 NF_VERSION=19.04
 NF=/pbs/throng/lbmc/cl7/nextflow/${NF_VERSION}/nextflow
-PIPELINE=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.nf
-CONFIG=/sps/lbmc/common/nextflow/src/nf_modules/kallisto/indexing.config
+# change to your username
+SCRATCH=/sps/lbmc/<user>/
+# change to your project / pipeline !
+PIPELINE=${SCRATCH}/<project>/src/<pipeline>.nf
+# change to your project / pipeline !
+CONFIG=${SCRATCH}/<project>/src/<pipeline>.config
 
 ${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
---fasta "/sps/lbmc/common/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
--w "/sps/lbmc/<user>/"
+--fasta "${SCRATCH}/<project>/data/fasta" \
+-w "${SCRATCH}"