From 7c1e0c6c93500481a88ac88907470d06e53a566b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 14 Apr 2021 18:30:45 +0200
Subject: [PATCH] bowtie2: replace pair_id by file_id
---
src/nf_modules/bowtie2/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/bowtie2/main.nf b/src/nf_modules/bowtie2/main.nf
index 82bab9e6..1dc0780d 100644
--- a/src/nf_modules/bowtie2/main.nf
+++ b/src/nf_modules/bowtie2/main.nf
@@ -43,10 +43,10 @@ process mapping_fastq {
input:
tuple val(index_id), path(index)
- tuple val(pair_id), path(reads)
+ tuple val(file_id), path(reads)
output:
- tuple val(pair_id), path("*.bam"), emit: bam
+ tuple val(file_id), path("*.bam"), emit: bam
path "*_report.txt", emit: report
script:
--
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