diff --git a/src/nf_modules/music/tests.sh b/src/nf_modules/music/tests.sh index 7e44e5d06e4adf4d77a6eaf7bad112246c0fb92c..4cb3993905385e88bf6b71220bee875d8e080f82 100755 --- a/src/nf_modules/music/tests.sh +++ b/src/nf_modules/music/tests.sh @@ -1,9 +1,9 @@ -cp results/training/bams/sBNLN18.bam results/training/bams/sBNLN18_control.bam +cp data/tiny_dataset/map/tiny_v2.sort.bam data/tiny_dataset/map/tiny_v2_control.sort.bam ./nextflow src/nf_modules/music/peak_calling_single.nf \ -c src/nf_modules/music/peak_calling_single.config \ -profile docker \ - --fasta "results/training/fasta/*.fasta" \ - --bam "results/training/bams/s*.bam" \ - --index "results/training/mapping/index/*" \ + --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \ + --bam "data/tiny_dataset/map/*.sort.bam" \ + --index "data/tiny_dataset/map/*.sort.bam.bai*" \ --read_size 50 --frag_size 300 \ -resume