From 7a9844b542c24f60adb4a04d9511a35a3c08884c Mon Sep 17 00:00:00 2001
From: Emmanuel Labaronne <emmanuel.labaronne@ens-lyon.fr>
Date: Tue, 29 Sep 2020 16:51:29 +0200
Subject: [PATCH] tophat dockerfile : fix beug and add bowtie1 installation
---
src/.docker_modules/tophat/2.1.1/Dockerfile | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/src/.docker_modules/tophat/2.1.1/Dockerfile b/src/.docker_modules/tophat/2.1.1/Dockerfile
index 82d3c5d6..3c34d464 100644
--- a/src/.docker_modules/tophat/2.1.1/Dockerfile
+++ b/src/.docker_modules/tophat/2.1.1/Dockerfile
@@ -2,8 +2,10 @@ FROM ubuntu:18.04
MAINTAINER Laurent Modolo
ENV TOPHAT_VERSION=2.1.1
-ENV PACKAGES tophat=${BOWTIE2_VERSION}*
+ENV PACKAGES tophat=${TOPHAT_VERSION}*\
+ bowtie=1.2.2*\
+ libsys-hostname-long-perl
RUN apt-get update && \
- apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
--
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