diff --git a/src/nf_modules/gatk4/main.nf b/src/nf_modules/gatk4/main.nf index c17f43174aa4bb0d820b9c91199ba3a1d4a0048a..0c1fb95074f8ce01f2c7a063f41d30735da80ee4 100644 --- a/src/nf_modules/gatk4/main.nf +++ b/src/nf_modules/gatk4/main.nf @@ -3,12 +3,12 @@ container_url = "broadinstitute/gatk:${version}" include { index_fasta as samtools_index_fasta; -} from './nf_modules/samtools/main.nf' +} from './../nf_modules/samtools/main.nf' include { index_fasta as picard_index_fasta; index_bam as picard_index_bam; mark_duplicate; -} from './nf_modules/picard/main.nf' +} from './../nf_modules/picard/main.nf' params.variant_calling_out = "" workflow germline_cohort_data_variant_calling {