From 6cc2e1a873ff705fe67b521343ce547967c22544 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 6 May 2021 16:08:27 +0200
Subject: [PATCH] alntools: remove chunck option
---
src/nf_modules/alntools/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/alntools/main.nf b/src/nf_modules/alntools/main.nf
index 2363e478..813a7d78 100644
--- a/src/nf_modules/alntools/main.nf
+++ b/src/nf_modules/alntools/main.nf
@@ -31,6 +31,6 @@ END{
{print i"\\t"LEN[i]}
}
' ${gtf} > ${gtf.simpleName}_transcripts_lengths.tsv
-alntools bam2ec ${params.bam2ec} -t ${gtf.simpleName}_transcripts_lengths.tsv -c 8 ${bam} ${bam.simpleName}.bin
+alntools bam2ec ${params.bam2ec} -t ${gtf.simpleName}_transcripts_lengths.tsv ${bam} ${bam.simpleName}.bin
"""
}
\ No newline at end of file
--
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