diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index e5c72cd41304549091c38d3e5bead7056a12c3dd..e78d35c55b6d6dc578c5cde3cf77f57a0e217e0e 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -23,7 +23,6 @@ workflow dpos_bam_bg { bedgraph = wig2_to_bedgraph2.out.bedgraph wig = dpos_bam.out.wig bed = dpos_bam.out.bed - folder = dpos_bam.out.folder } process dpos_bam { @@ -41,7 +40,6 @@ process dpos_bam { output: tuple val(file_id), path("${file_prefix}/${bam_ip.simpleName}*.wig"), path("${file_prefix}/${bam_wce.simpleName}*.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed - tuple val(file_id), path("${file_prefix}"), emit: folder script: @@ -85,7 +83,6 @@ workflow dpos_bw { bedgraph = wig_to_bedgraph.out.bedgraph wig = dpos_wig.out.wig bed = dpos_wig.out.bed - folder = dpos_wig.out.folder } process dpos_wig { @@ -103,7 +100,6 @@ process dpos_wig { output: tuple val(file_id), path("${file_prefix}/${wig_ip.simpleName}*.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed - tuple val(file_id), path("${file_prefix}"), emit: folder script: @@ -151,7 +147,6 @@ workflow dwig_bwvsbw { bedgraph = wig_to_bedgraph.out.bedgraph wig = dpeak_wig.out.wig bed = dpeak_wig.out.bed - folder = dpeak_wig.out.folder } process dpos_wigvswig { @@ -170,7 +165,6 @@ process dpos_wigvswig { output: tuple val(file_id), path("${file_prefix}/${wig_ip_a.simpleName}*.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed - tuple val(file_id_a), path("${file_prefix}"), emit: folder script: @@ -221,7 +215,6 @@ process dpeak_bam { tuple val(file_id), path("${file_prefix}/${bam_ip.simpleName}*.wig"), path("${file_prefix}/${bam_wce.simpleName}*.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), path("${file_prefix}/*.summit.bed"), emit: bed tuple val(file_id), path("${file_prefix}/*.bed"), emit: bed - tuple val(file_id), path("${file_prefix}"), emit: folder script: @@ -266,7 +259,6 @@ workflow dpeak_bw { bedgraph = wig2_to_bedgraph2.out.bedgraph wig = dpeak_wig.out.wig bed = dpeak_wig.out.bed - folder = dpeak_wig.out.folder } @@ -285,7 +277,6 @@ process dpeak_wig { output: tuple val(file_id), path("${file_prefix}/${wig_ip.simpleName}.bgsub.wig"), path("${file_prefix}/${wig_wce.simpleName}.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), path("${file_prefix}/*.summit.bed"), emit: bed - tuple val(file_id), path("${file_prefix}"), emit: folder script: @@ -335,7 +326,6 @@ workflow dpeak_bwvsbw { bedgraph = wig2_to_bedgraph2.out.bedgraph wig = dpeak_wig.out.wig bed = dpeak_wig.out.bed - folder = dpeak_wig.out.folder } @@ -355,7 +345,6 @@ process dpeak_wigvswig { output: tuple val(file_id), path("${file_prefix}/${wig_ip_a.simpleName}.bgsub.wig"), path("${file_prefix}/${wig_wce_a.simpleName}.wig"), emit: wig tuple val(file_id), path("${file_prefix}/*.positions.bed"), path("${file_prefix}/*.summit.bed"), emit: bed - tuple val(file_id_a), path("${file_prefix}"), emit: folder script: