From 6b6d059a2d05f218ff2579b434480a32524a1051 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 16 Jun 2021 09:15:24 +0200
Subject: [PATCH] example_marseq.nf: cosmetic changes
---
src/example_marseq.nf | 24 ++++++++++++++++++++----
1 file changed, 20 insertions(+), 4 deletions(-)
diff --git a/src/example_marseq.nf b/src/example_marseq.nf
index 4be90c78..821ebd99 100644
--- a/src/example_marseq.nf
+++ b/src/example_marseq.nf
@@ -62,10 +62,26 @@ channel
workflow {
adaptor_removal(fastq_files)
if (params.workflow_type == "classic") {
- index_fasta(fasta_files, gtf_files)
- count(index_fasta.out.index, adaptor_removal.out.fastq, index_fasta.out.t2g, whitelist_files, config_files)
+ index_fasta(
+ fasta_files,
+ gtf_files
+ )
+ count(
+ index_fasta.out.index,
+ adaptor_removal.out.fastq,
+ index_fasta.out.t2g, whitelist_files,config_files
+ )
} else {
- index_fasta_velocity(fasta_files, gtf_files)
- count_velocity(index_fasta_velocity.out.index, adaptor_removal.out.fastq, index_fasta_velocity.out.t2g, whitelist_files, config_files)
+ index_fasta_velocity(
+ fasta_files,
+ gtf_files
+ )
+ count_velocity(
+ index_fasta_velocity.out.index,
+ adaptor_removal.out.fastq,
+ index_fasta_velocity.out.t2g,
+ whitelist_files,
+ config_files
+ )
}
}
--
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