From 6a9d1f73a5d714835e13a7c91b035a2813d18b4e Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 Apr 2019 17:10:21 +0200
Subject: [PATCH] kallisto: try to remove option for in2p3 qsub

---
 src/nf_modules/kallisto/indexing.config | 9 ++-------
 1 file changed, 2 insertions(+), 7 deletions(-)

diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index ec17ee56..43e3ced0 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -43,8 +43,6 @@ profiles {
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
         cpus = 1
-        memory = "10GB"
-        time = "24h"
         queue = 'huge'
       }
     }
@@ -59,11 +57,8 @@ profiles {
         stageOutMode = "rsync"
         executor = "sge"
         clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
-        cpus = 4
-        memory = "10GB"
-        time = "24h"
-        queue = 'mc_huge'
-        penv = 'multicores'
+        cpus = 1
+        queue = 'huge'
       }
     }
   }
-- 
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