From 6a9d1f73a5d714835e13a7c91b035a2813d18b4e Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 16 Apr 2019 17:10:21 +0200 Subject: [PATCH] kallisto: try to remove option for in2p3 qsub --- src/nf_modules/kallisto/indexing.config | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index ec17ee56..43e3ced0 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -43,8 +43,6 @@ profiles { executor = "sge" clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" cpus = 1 - memory = "10GB" - time = "24h" queue = 'huge' } } @@ -59,11 +57,8 @@ profiles { stageOutMode = "rsync" executor = "sge" clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" - cpus = 4 - memory = "10GB" - time = "24h" - queue = 'mc_huge' - penv = 'multicores' + cpus = 1 + queue = 'huge' } } } -- GitLab