From 5fca29e5e567feb32bfbe1554247bdbeb89517f4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 12 Apr 2019 16:14:03 +0200
Subject: [PATCH] kallisto: remove bash config
---
src/nf_modules/kallisto/indexing.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index cfc6d758..0dd7e42d 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -41,7 +41,7 @@ profiles {
stageInMode = "copy"
stageOutMode = "rsync"
executor = "sge"
- clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n -S '/usr/local/bin/bash -l'"
+ clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
cpus = 4
memory = "8GB"
time = "24h"
--
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