diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index cfc6d75875af12648bf78ef17f8339f967c65f1d..0dd7e42d42cc78fd9207060df4bde1944433cffc 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -41,7 +41,7 @@ profiles { stageInMode = "copy" stageOutMode = "rsync" executor = "sge" - clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n -S '/usr/local/bin/bash -l'" + clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n" cpus = 4 memory = "8GB" time = "24h"