diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 180ae72a2095b8d95f2a59b965773894cc4014de..b30ca5d2f2f9037b789f227318ae1894d729f08c 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -128,7 +128,7 @@ danpos.py dpos -m ${m} \ ${wig_ip} mv ${file_prefix}/pooled/* ${file_prefix}/ rm -R ${file_prefix}/pooled -awk -v FS='\t' -v OFS='\t' 'FNR > 1 { print \$1, \$2-1, \$3, "Interval_"NR-1, \$6, "+" }' ${file_prefix}/${bam_ip.simpleName}.positions.xls > ${file_prefix}/${bam_ip.simpleName}.positions.bed +awk -v FS='\t' -v OFS='\t' 'FNR > 1 { print \$1, \$2-1, \$3, "Interval_"NR-1, \$6, "+" }' ${file_prefix}/${wig_ip.simpleName}.positions.xls > ${file_prefix}/${wig_ip.simpleName}.positions.bed """ }