diff --git a/src/nf_modules/kallisto/indexing.nf b/src/nf_modules/kallisto/indexing.nf
index ea153569693b5dd057727a072d14dadd0ce77bf5..76b168b23261cb92a0a4f8a8e6bf98228c2d84ea 100644
--- a/src/nf_modules/kallisto/indexing.nf
+++ b/src/nf_modules/kallisto/indexing.nf
@@ -10,6 +10,7 @@ Channel
 process index_fasta {
   tag "$fasta.baseName"
   publishDir "results/mapping/index/", mode: 'copy'
+  echo true
 
   input:
     file fasta from fasta_file
@@ -20,6 +21,7 @@ process index_fasta {
 
   script:
 """
+pwd
 kallisto index -k 31 --make-unique -i ${fasta.baseName}.index ${fasta} \
 2> ${fasta.baseName}_kallisto_report.txt
 """