From 59f8cb0a69f0af55786aa758601b5dbdd651a772 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 10 Feb 2021 09:08:10 +0100
Subject: [PATCH] nf_modules: add ucsc bg to bw fix output
---
src/nf_modules/ucsc/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf
index b4fe98df..1e288e83 100644
--- a/src/nf_modules/ucsc/main.nf
+++ b/src/nf_modules/ucsc/main.nf
@@ -11,10 +11,11 @@ process bedgraph_to_bigwig {
tuple val(file_id) path(bed)
output:
- tuple val(file_id), path("*.bw"), emit: fasta
+ tuple val(file_id), path("*.bw"), emit: bw
script:
"""
+LC_COLLATE=C
# transform bed file of start-stop chromosome size to stop chromosome size
awk -v OFS="\\t" '{print \$1, \$3}' ${bed} > chromsize.txt
--
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