diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index b4fe98dfac4378c00c828ee4119955d4e03fca83..1e288e835c03a7564587e7862d28944683ce4780 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -11,10 +11,11 @@ process bedgraph_to_bigwig { tuple val(file_id) path(bed) output: - tuple val(file_id), path("*.bw"), emit: fasta + tuple val(file_id), path("*.bw"), emit: bw script: """ +LC_COLLATE=C # transform bed file of start-stop chromosome size to stop chromosome size awk -v OFS="\\t" '{print \$1, \$3}' ${bed} > chromsize.txt