diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 03eb48c5755476314dce154f961f20ff7ce27dbf..171f56aab445d6ca1a0599045be7dcf22ad75b2a 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -19,7 +19,7 @@ The `LBMC/nextflow` project is structured as follows: ## Code structure -The `src/` folder is where we want to save the pipeline (`.nf`) script. This folder also contains +The `src/` folder is where we want to save the pipeline (`.nf`) scripts. This folder also contains - the `src/install_nextflow.sh` to install the nextflow executable at the root of the project. - some pipelines examples (like the one build during the nf_pratical) - the `src/nextflow.config` global configuration file which contains the `docker`, `singularity`, `psmn` and `ccin2p3` profiles. @@ -252,6 +252,7 @@ The [`src/.docker_modules/<tool_name>/<version_number>`](./src/nf_modules/fastp/ ### `Dockerfile` The [`Dockerfile`](./src/.docker_module/fastp/0.20.1/Dockerfile) shoud contains a `docker` recipe to build a image with `<tool_name>` installed in a system-wide binary folder (`/bin`, `/usr/local/bin/`, etc). +Therefore, your scripts are easily accessible from within the container. This recipe should have: