From 566d96a197c584a53fce9de2f6143a1d06d6574e Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 22 Mar 2022 16:59:56 +0100
Subject: [PATCH] gffread: fix typo :58
---
src/nf_modules/gffread/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/gffread/main.nf b/src/nf_modules/gffread/main.nf
index bc1c87e0..94dfacf0 100644
--- a/src/nf_modules/gffread/main.nf
+++ b/src/nf_modules/gffread/main.nf
@@ -55,8 +55,8 @@ process spliced_cds {
}
"""
gzip -dc ${fasta} > ${fasta.simpleName}_un.fasta
-gzip -dc ${gtf} > ${gff.simpleName}_un.gtf
-gffread -x -M - -g ${fasta.simpleName}_un.fasta ${gff.simpleName}_un.gtf \
+gzip -dc ${gtf} > ${gtf.simpleName}_un.gtf
+gffread -x -M - -g ${fasta.simpleName}_un.fasta ${gtf.simpleName}_un.gtf \
> ${file_prefix}.fasta
"""
}
\ No newline at end of file
--
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