From 53ac947001631ff9ad2a4c2b7f08e84ae032526c Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 18 Oct 2021 16:26:00 +0200
Subject: [PATCH] ucsc: rm wig2bedgraph process
---
src/nf_modules/ucsc/main.nf | 22 ----------------------
1 file changed, 22 deletions(-)
diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf
index 06ac54f0..6ce54f0d 100644
--- a/src/nf_modules/ucsc/main.nf
+++ b/src/nf_modules/ucsc/main.nf
@@ -35,28 +35,6 @@ sort -T ./ -k1,1 -k2,2n ${bg} > \
"""
}
-params.wig2bedgraph = ""
-params.wig2bedgraph_out = ""
-process wig2bedgraph {
- container = "${container_url}"
- label "big_mem_mono_cpus"
- tag "${file_id}"
- if (params.wig2bedgraph_out != "") {
- publishDir "results/${params.wig2bedgraph_out}", mode: 'copy'
- }
-
- input:
- tuple val(file_id) path(wig)
-
- output:
- tuple val(file_id), path("*.bg"), emit: bedgraph
-
- script:
-"""
-wigToBedGraph ${wig} ${wig.simpleName}.bg
-"""
-}
-
params.wig_to_bedgraph = ""
params.wig_to_bedgraph_out = ""
process wig_to_bedgraph {
--
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