diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index 06ac54f0bab935af92b6a4079dd693bfa6108f5b..6ce54f0d7684d830f1276a4d998611f40cb09e76 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -35,28 +35,6 @@ sort -T ./ -k1,1 -k2,2n ${bg} > \ """ } -params.wig2bedgraph = "" -params.wig2bedgraph_out = "" -process wig2bedgraph { - container = "${container_url}" - label "big_mem_mono_cpus" - tag "${file_id}" - if (params.wig2bedgraph_out != "") { - publishDir "results/${params.wig2bedgraph_out}", mode: 'copy' - } - - input: - tuple val(file_id) path(wig) - - output: - tuple val(file_id), path("*.bg"), emit: bedgraph - - script: -""" -wigToBedGraph ${wig} ${wig.simpleName}.bg -""" -} - params.wig_to_bedgraph = "" params.wig_to_bedgraph_out = "" process wig_to_bedgraph {