From 52d584511d04bc422102cf1f9a57dfc357450d6a Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 6 Jun 2018 10:33:45 +0200
Subject: [PATCH] trimming: make output channel more clear
---
src/nf_modules/UrQt/urqt.nf | 2 +-
src/nf_modules/cutadapt/cutadapt.nf | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/UrQt/urqt.nf b/src/nf_modules/UrQt/urqt.nf
index ece556aa..85247d98 100644
--- a/src/nf_modules/UrQt/urqt.nf
+++ b/src/nf_modules/UrQt/urqt.nf
@@ -27,7 +27,7 @@ process trimming {
set pair_id, file(reads) from fastq_files
output:
- file "*_trim_R{1,2}.fastq.gz" into fastq_files_cut
+ file "*_trim_R{1,2}.fastq.gz" into fastq_files_trim
script:
"""
diff --git a/src/nf_modules/cutadapt/cutadapt.nf b/src/nf_modules/cutadapt/cutadapt.nf
index 094f30b9..e2a0681a 100644
--- a/src/nf_modules/cutadapt/cutadapt.nf
+++ b/src/nf_modules/cutadapt/cutadapt.nf
@@ -91,7 +91,7 @@ process trimming {
set pair_id, file(reads) from fastq_files
output:
- file "*_trim_R{1,2}.fastq.gz" into fastq_files_cut
+ file "*_trim_R{1,2}.fastq.gz" into fastq_files_trim
script:
"""
@@ -122,7 +122,7 @@ process trimming {
file reads from fastq_files
output:
- file "*_trim.fastq.gz" into fastq_files_cut
+ file "*_trim.fastq.gz" into fastq_files_trim
script:
"""
--
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