diff --git a/src/.docker_modules/ribotricer/1.3.2/Dockerfile b/src/.docker_modules/ribotricer/1.3.2/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..451a68a1fdf14d8e517f6aad5504f516993cfa1f --- /dev/null +++ b/src/.docker_modules/ribotricer/1.3.2/Dockerfile @@ -0,0 +1,13 @@ +FROM ubuntu:20.04 +MAINTAINER Emmanuel Labaronne + +ENV RIBOTRICER_VERSION=1.3.2 +ENV PACKAGES python3\ + python3-dev\ + python3-pip + +RUN apt-get update && \ + apt-get install -y ${PACKAGES} && \ + apt-get clean + +RUN pip3 install ribotricer==${RIBOTRICER_VERSION} diff --git a/src/.docker_modules/ribotricer/1.3.2/docker_init.sh b/src/.docker_modules/ribotricer/1.3.2/docker_init.sh new file mode 100644 index 0000000000000000000000000000000000000000..71311abf3f5168669979e0494ffe3e1f344da9dd --- /dev/null +++ b/src/.docker_modules/ribotricer/1.3.2/docker_init.sh @@ -0,0 +1,4 @@ +#!/bin/sh +docker pull lbmc/ribotricer:1.3.2 +docker build src/.docker_modules/ribotricer/1.3.2 -t 'lbmc/ribotricer:1.3.2' +docker push lbmc/ribotricer:1.3.2 diff --git a/src/.docker_modules/tophat/2.1.1/Dockerfile b/src/.docker_modules/tophat/2.1.1/Dockerfile index 82d3c5d634b59ede9281f56b00f7cc6be1f316e6..3c34d4641239ebfa7cbb65a716e436f2e0c099ee 100644 --- a/src/.docker_modules/tophat/2.1.1/Dockerfile +++ b/src/.docker_modules/tophat/2.1.1/Dockerfile @@ -2,8 +2,10 @@ FROM ubuntu:18.04 MAINTAINER Laurent Modolo ENV TOPHAT_VERSION=2.1.1 -ENV PACKAGES tophat=${BOWTIE2_VERSION}* +ENV PACKAGES tophat=${TOPHAT_VERSION}*\ + bowtie=1.2.2*\ + libsys-hostname-long-perl RUN apt-get update && \ - apt-get install -y --no-install-recommends ${PACKAGES} && \ + apt-get install -y --no-install-recommends ${PACKAGES} && \ apt-get clean