diff --git a/src/.docker_modules/samtools/1.14/Dockerfile b/src/.docker_modules/samtools/1.14/Dockerfile new file mode 100644 index 0000000000000000000000000000000000000000..0ea866279e6cd0c0a157acd9da227574c90a1db1 --- /dev/null +++ b/src/.docker_modules/samtools/1.14/Dockerfile @@ -0,0 +1,41 @@ +FROM quay.io/biocontainers/samtools:1.14--hb421002_0 AS build + +# ldd /usr/local/bin/samtools +# linux-vdso.so.1 (0x00007ffec91ca000) +# libhts.so.3 => /usr/local/bin/../lib/libhts.so.3 (0x00007fa2fc31f000) +# libtinfow.so.6 => /usr/local/bin/../lib/libtinfow.so.6 (0x00007fa2fc2e0000) +# libncursesw.so.6 => /usr/local/bin/../lib/libncursesw.so.6 (0x00007fa2fc2a3000) +# libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fa2fc11f000) +# libz.so.1 => /usr/local/bin/../lib/libz.so.1 (0x00007fa2fc105000) +# libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fa2fc0e4000) +# libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fa2fbf21000) +# libdeflate.so.0 => /usr/local/bin/../lib/./libdeflate.so.0 (0x00007fa2fbf11000) +# liblzma.so.5 => /usr/local/bin/../lib/./liblzma.so.5 (0x00007fa2fbee8000) +# libbz2.so.1.0 => /usr/local/bin/../lib/./libbz2.so.1.0 (0x00007fa2fbed4000) +# libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fa2fbecf000) +# /lib64/ld-linux-x86-64.so.2 (0x00007fa2fc4af000) +# librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fa2fbec3000) + +ENV SAMTOOLS_VERSION=1.14 +ENV PACKAGES bash +FROM alpine:3.8 AS env +RUN apk update && \ + apk add ${PACKAGES} +COPY --from=build \ + /usr/local/bin/samtools /usr/local/bin/ +COPY --from=build \ + /usr/local/bin/../lib/libhts.so.3 \ + /usr/local/lib/libtinfow.so.6 \ + /usr/local/lib/libncursesw.so.6 \ + /usr/local/lib/libz.so.1 \ + /usr/local/lib/libdeflate.so.0 \ + /usr/local/lib/liblzma.so.5 \ + /usr/local/lib/libbz2.so.1.0 /usr/local/lib/ +COPY --from=build \ + /lib/x86_64-linux-gnu/libm.so.6 \ + /lib/x86_64-linux-gnu/libpthread.so.0 \ + /lib/x86_64-linux-gnu/libc.so.6 \ + /lib/x86_64-linux-gnu/libdl.so.2 \ + /lib/x86_64-linux-gnu/librt.so.1 /lib/x86_64-linux-gnu/ +COPY --from=build \ + /lib64/ld-linux-x86-64.so.2 /lib64/ \ No newline at end of file diff --git a/src/.docker_modules/samtools/1.14/docker_init.sh b/src/.docker_modules/samtools/1.14/docker_init.sh new file mode 100755 index 0000000000000000000000000000000000000000..1d4a215f9637f853bb52b7303772d0f1e64df213 --- /dev/null +++ b/src/.docker_modules/samtools/1.14/docker_init.sh @@ -0,0 +1,5 @@ +#!/bin/sh +docker pull lbmc/samtools:1.14 +# docker build src/.docker_modules/samtools/1.14 -t 'lbmc/samtools:1.14' +# docker push lbmc/samtools:1.14 +docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/samtools:1.14" --push src/.docker_modules/samtools/1.14