diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf index 794002d073d52e9c9a42920e7b084d386d6d5341..552d5820dd916dde6d68d275691a021ce2003d1f 100644 --- a/src/nf_modules/ucsc/main.nf +++ b/src/nf_modules/ucsc/main.nf @@ -46,11 +46,11 @@ workflow wig_to_bedgraph { fasta, wig ) - bigwig1_to_bedgraph1( + bigwig_to_bedgraph( wig_to_bigwig.out.bw ) emit: - bg = bigwig1_to_bedgraph1.out.bg + bg = bigwig_to_bedgraph.out.bg } workflow wig2_to_bedgraph2 { @@ -69,18 +69,18 @@ workflow wig2_to_bedgraph2 { bg = bigwig2_to_bedgraph2.out.bg } -params.bigwig1_to_bedgraph1 = "" -params.bigwig1_to_bedgraph1_out = "" -process bigwig1_to_bedgraph1 { +params.bigwig_to_bedgraph = "" +params.bigwig_to_bedgraph_out = "" +process bigwig_to_bedgraph { container = "${container_url}" label "big_mem_mono_cpus" tag "${file_id}" - if (params.bigwig1_to_bedgraph1_out != "") { - publishDir "results/${params.bigwig1_to_bedgraph1_out}", mode: 'copy' + if (params.bigwig_to_bedgraph_out != "") { + publishDir "results/${params.bigwig_to_bedgraph_out}", mode: 'copy' } input: - tuple val(file_id) path(bw) + tuple val(file_id), path(bw) output: tuple val(file_id), path("*.bg"), emit: bg