From 47445222f2c22d5248714a75ec8c26318884b32f Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Oct 2021 17:14:08 +0200
Subject: [PATCH] ucsc: remote - from bigWigToWig
---
src/nf_modules/ucsc/main.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/ucsc/main.nf b/src/nf_modules/ucsc/main.nf
index 6e3ebc19..323536a0 100644
--- a/src/nf_modules/ucsc/main.nf
+++ b/src/nf_modules/ucsc/main.nf
@@ -49,7 +49,7 @@ process bigwig_to_wig {
script:
"""
-bigWigToWig ${params.bigwig_to_wig} - \
+bigWigToWig ${params.bigwig_to_wig} \
${bg} \
${bg.simpleName}.wig
"""
@@ -73,10 +73,10 @@ process bigwig2_to_wig2 {
script:
"""
-bigWigToWig ${params.bigwig_to_wig} - \
+bigWigToWig ${params.bigwig_to_wig} \
${bw_a} \
${bw_a.simpleName}.wig
-bigWigToWig ${params.bigwig_to_wig} - \
+bigWigToWig ${params.bigwig_to_wig} \
${bw_b} \
${bw_b.simpleName}.wig
"""
--
GitLab