From 46f9f1948893269047ba9435846ab8ebca89fbd8 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 6 Dec 2019 15:54:13 +0100
Subject: [PATCH] conda_packages.sh: add gatk4
---
src/.conda_packages.sh | 3 +++
1 file changed, 3 insertions(+)
diff --git a/src/.conda_packages.sh b/src/.conda_packages.sh
index bbf88057..b082c7fc 100644
--- a/src/.conda_packages.sh
+++ b/src/.conda_packages.sh
@@ -78,6 +78,9 @@ fi
if [ ! -d ${CONDA_ENVS}gatk_3.8 ]; then
conda create --yes --name gatk_3.8 gatk=3.8
fi
+if [ ! -d ${CONDA_ENVS}gatk_4.0.8.1 ]; then
+ conda create --yes --name gatk_4.0.8.1 gatk4=4.0.8.1-0
+fi
if [ ! -d ${CONDA_ENVS}cutadapt_1.14 ]; then
conda create --yes --name cutadapt_1.14 cutadapt=1.14
fi
--
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