diff --git a/src/nf_modules/BWA/indexing.config b/src/nf_modules/BWA/indexing.config index 7f889670db9cbd56668a14dc2ca82caefadc94c4..03c2f639d41f9a30d8848b221218ff0d5f3db36b 100644 --- a/src/nf_modules/BWA/indexing.config +++ b/src/nf_modules/BWA/indexing.config @@ -11,15 +11,13 @@ profiles { psmn { process{ withname: index_fasta { - beforeScript = "module purge; module load BWA/0.7.17" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "BWA/0.7.17" executor = "sge" cpus = 1 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' - queue = 'h6-E5-2667v4deb128' - penv = 'openmp8' + memory = "30GB" + time = "12h" + queue = 'monointeldeb128' } } } diff --git a/src/nf_modules/BWA/mapping_paired.config b/src/nf_modules/BWA/mapping_paired.config index d9d7a826751f1768c56ebb40e9ffe069af02cf14..cbf47e278862ad0e4c5e59dba78391cccfcf631e 100644 --- a/src/nf_modules/BWA/mapping_paired.config +++ b/src/nf_modules/BWA/mapping_paired.config @@ -11,15 +11,14 @@ profiles { psmn { process{ withname: mapping_fastq { - beforeScript = "module purge; module load BWA/0.7.17" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "BWA/0.7.17" executor = "sge" - cpus = 4 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' - queue = 'h6-E5-2667v4deb128' - penv = 'openmp8' + cpus = 16 + memory = "30GB" + time = "24h" + queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F' + penv = 'openmp16' } } }