From 42b7c6478f55e150c6afa0c058c92acc78055cca Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Thu, 28 Nov 2019 14:31:41 +0100
Subject: [PATCH] in2p3.pbs: fix work for nf
---
src/in2p3.pbs | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/in2p3.pbs b/src/in2p3.pbs
index bb4f7dff..7f929a7e 100644
--- a/src/in2p3.pbs
+++ b/src/in2p3.pbs
@@ -27,5 +27,5 @@ CONFIG=${SCRATCH}/nextflow/src/training_dataset.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
--fastq_single "${SCRATCH}/nextflow/data/tiny_dataset/fastq/tiny2_S.fastq.gz" \
---chromosome "X" --start 5305683 --stop 5333928 -resume
+--chromosome "X" --start 5305683 --stop 5333928 -resume \
-w "${SCRATCH}"
--
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