From 40e33e80a2d33abace5b72d5240740a877663105 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Thu, 28 Nov 2019 11:36:08 +0100
Subject: [PATCH] in2p3.pbs: fix files path
---
src/in2p3.pbs | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/in2p3.pbs b/src/in2p3.pbs
index ac6d0869..bb4f7dff 100644
--- a/src/in2p3.pbs
+++ b/src/in2p3.pbs
@@ -25,7 +25,7 @@ PIPELINE=${SCRATCH}/nextflow/src/training_dataset.nf
CONFIG=${SCRATCH}/nextflow/src/training_dataset.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \
---fasta "${SCRATCH}/nextflow/data/genome.fa" \
---fastq_single "${SCRATCH}/nextflow/data/*_R1.fastq.gz" \
+--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
+--fastq_single "${SCRATCH}/nextflow/data/tiny_dataset/fastq/tiny2_S.fastq.gz" \
--chromosome "X" --start 5305683 --stop 5333928 -resume
-w "${SCRATCH}"
--
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