From 3f8b847ce8a12b979a70f622fe1a0e5f164d9876 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 19 Jul 2021 16:09:00 +0200
Subject: [PATCH] kb: change sort option for t2g
---
src/nf_modules/kb/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf
index 9e4cfec2..7c0de279 100644
--- a/src/nf_modules/kb/main.nf
+++ b/src/nf_modules/kb/main.nf
@@ -37,8 +37,8 @@ process tr2g {
script:
"""
t2g.py --gtf ${gtf}
- sort -u t2g_dup.txt > t2g.txt
- rm t2g_dup.txt
+ sort -k1u t2g_dup.txt > t2g.txt
+ cp t2g.txt t2g.txt.back
"""
}
--
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