From 3cb0f062624e1175cacbe36b550ea75250f7a135 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 Apr 2019 17:00:10 +0200
Subject: [PATCH] kallisto: index.config test mc_huge for indexing
---
src/nf_modules/kallisto/indexing.config | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 699aff4e..ec17ee56 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -59,10 +59,11 @@ profiles {
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
- cpus = 1
+ cpus = 4
memory = "10GB"
time = "24h"
- queue = 'huge'
+ queue = 'mc_huge'
+ penv = 'multicores'
}
}
}
--
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