diff --git a/src/nf_modules/deeptools/main.nf b/src/nf_modules/deeptools/main.nf
index 2e658d1cdd74abd9e1a532f7e8a99e73d6ce1341..79b003a5d2dd1d0fc22f78db86dc77a8a2403e51 100644
--- a/src/nf_modules/deeptools/main.nf
+++ b/src/nf_modules/deeptools/main.nf
@@ -1,4 +1,4 @@
-version = "3.1.1"
+version = "3.5.0"
 container_url = "lbmc/deeptools:${version}"
 
 params.index_bam = ""