diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index 8254a591fa2a059bccbf6ed28e9f7954e505053e..0f3986c7e816fe5bed0538a11f9d5d269926a838 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -334,7 +334,7 @@ process velocity_default { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ -x 10XV3 \ ${params.count} \ @@ -389,7 +389,7 @@ process velocity_marseq { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ ${params.count} \ -x 1,0,6:1,6,14:0,0,0 \ @@ -408,7 +408,7 @@ process velocity_marseq { -o ${file_prefix} \ -c1 ${cdna_t2g} \ -c2 ${intron_t2g} \ - --lamanno \ + --workflow lamanno \ ${whitelist_param} \ ${params.count} \ -x 1,0,6:1,6,14:0,0,0 \